PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0073.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 252aa    MW: 27391.6 Da    PI: 7.973
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.78.7e-20125159135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC +t+TplWR+gp g+k+LCnaCG++y+k+++
  Kaladp0060s0073.1.p 125 CANCDATSTPLWRNGPKGPKSLCNACGIRYKKEER 159
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.969119155IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-19119171IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-13122161No hitNo description
Gene3DG3DSA:3.30.50.104.7E-17123159IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-12124156No hitNo description
PROSITE patternPS003440125150IPR000679Zinc finger, GATA-type
PfamPF003202.3E-17125159IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMHNNMYYSQ SNGGQQPCYD YDYYCSADPY SYHGFDSTSS STSSHVDCTL SLGTPSTRSE  60
AGGEQTKKQS SRRGGSRVSN FCRDLLQQTT SSSSKHSAAQ NGTNSYSKSG RVSGGGRDPL  120
VARRCANCDA TSTPLWRNGP KGPKSLCNAC GIRYKKEERR ASAAASNGSG ASAMESQYAS  180
SEHYYSNQSY THHHQSQKMN CLFPAGANEY HRYVDADEDG GHYEHSGNGG VSFLPWMLNV  240
ADRPSLVHDF T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371601.19e-63PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC798e-50GAT18_ARATH; GATA transcription factor 18
TrEMBLM5VSX07e-60M5VSX0_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-46GATA family protein